SRX6035748
GSM3872471: ALL-GABA-input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
primary cell
antibody target
None
primary antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Fixed cells were lysed and histone-DNA complexes were isolated with antibodies. Libraries were prepared on the Illumina Next-Seq 500 platform.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40540168
Reads aligned (%)
79.0
Duplicates removed (%)
22.2
Number of peaks
2264 (qval < 1E-05)

hg19

Number of total reads
40540168
Reads aligned (%)
77.5
Duplicates removed (%)
26.3
Number of peaks
1832 (qval < 1E-05)

Base call quality data from DBCLS SRA