SRX6034573
GSM3871818: GH3254: 1h Cort rep#1 GR ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr3c1

Cell type

Cell type Class
Breast
Cell type
C127
NA
NA

Attributes by original data submitter

Sample

source_name
33AP1C9 cells harboring stable integrations of a MMTV-pp7 reporter construct and expressing GFP-tagged PP7 coat protein
parental cell line
C127 cells
tissue
cell line derived from mouse mammary epithelial tissues
treatment
Corticosterone
concentration
600nM
time
1h
antibody
GR coctail: Thermo MA1-510, Santa Cruz #SC-1006

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and GR/DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
121631501
Reads aligned (%)
96.6
Duplicates removed (%)
37.8
Number of peaks
9287 (qval < 1E-05)

mm9

Number of total reads
121631501
Reads aligned (%)
96.3
Duplicates removed (%)
37.7
Number of peaks
9314 (qval < 1E-05)

Base call quality data from DBCLS SRA