SRX6034572
GSM3871816: GH3253: untreated rep#1 GR ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr3c1

Cell type

Cell type Class
Breast
Cell type
C127
NA
NA

Attributes by original data submitter

Sample

source_name
33AP1C9 cells harboring stable integrations of a MMTV-pp7 reporter construct and expressing GFP-tagged PP7 coat protein
parental cell line
C127 cells
tissue
cell line derived from mouse mammary epithelial tissues
treatment
untreated
concentration
--
time
0h
antibody
GR coctail: Thermo MA1-510, Santa Cruz #SC-1004

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and GR/DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
107568393
Reads aligned (%)
96.6
Duplicates removed (%)
31.1
Number of peaks
701 (qval < 1E-05)

mm9

Number of total reads
107568393
Reads aligned (%)
96.3
Duplicates removed (%)
31.0
Number of peaks
865 (qval < 1E-05)

Base call quality data from DBCLS SRA