SRX6033280
GSM3869933: Input clone21; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells stably expressing a cRAF-ErT2 expression cassette
cell type
mouse embryonic stem cells stably expressing a cRAF-ErT2 expression cassette
treatment
4OHT for 2hrs
strain
E14tg2a
background strain
129SV
Stage
embryonic
antibody
input sample

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
56358537
Reads aligned (%)
97.5
Duplicates removed (%)
12.7
Number of peaks
338 (qval < 1E-05)

mm9

Number of total reads
56358537
Reads aligned (%)
97.3
Duplicates removed (%)
12.7
Number of peaks
341 (qval < 1E-05)

Base call quality data from DBCLS SRA