Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells stably expressing a cRAF-ErT2 expression cassette
cell type
mouse embryonic stem cells stably expressing a cRAF-ErT2 expression cassette
treatment
untreated
strain
E14tg2a
background strain
129SV
Stage
embryonic
antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells we fixed in 1% formaldehyde at RT for 10 minutes, nuclei extracted and chromatin sonicated using a bioruptor (10 cycles, 30s on 30s off). Cleared chromatin was incubated with anti-H3K27me3 antibody (CST 9733). Input DNA serves as negative control for antibody enrichment. Libraries were prepared using the NEB Next Ultra 2 kit.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
37838686
Reads aligned (%)
96.5
Duplicates removed (%)
25.0
Number of peaks
276 (qval < 1E-05)

mm9

Number of total reads
37838686
Reads aligned (%)
96.2
Duplicates removed (%)
25.0
Number of peaks
303 (qval < 1E-05)

Base call quality data from DBCLS SRA