SRX6031094
GSM3863171: D538GClone3 DMSO (ATAC-seq); Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Endometrioid adenocarcinoma
cell line
Ishikawa D538G ESR1 clone 3
genotype
D538G ESR1
treatment
0.1% DMSO
time
1 hr

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
After treatments, cells were trypsinized and isolated by centrifugation. ATAC-seq was performed as originally described in Buenrostro et al. 2013

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
56173440
Reads aligned (%)
96.5
Duplicates removed (%)
75.9
Number of peaks
32596 (qval < 1E-05)

hg19

Number of total reads
56173440
Reads aligned (%)
96.1
Duplicates removed (%)
76.0
Number of peaks
32482 (qval < 1E-05)

Base call quality data from DBCLS SRA