SRX6031086
GSM3863164: WTClone2 E2 15D (ATAC-seq); Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Endometrioid adenocarcinoma
cell line
Ishikawa WT ESR1 clone 2
genotype
WT ESR1
treatment
10nM E2
time
15 days

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
After treatments, cells were trypsinized and isolated by centrifugation. ATAC-seq was performed as originally described in Buenrostro et al. 2013

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25583969
Reads aligned (%)
95.9
Duplicates removed (%)
90.8
Number of peaks
8437 (qval < 1E-05)

hg19

Number of total reads
25583969
Reads aligned (%)
95.6
Duplicates removed (%)
90.8
Number of peaks
8399 (qval < 1E-05)

Base call quality data from DBCLS SRA