Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293 T-Rex minus Dox
crispr status
WT
cell line
HEK293 T-Rex Flag-TFIISmut
treatment
none
antibody
RNAPII (4H8)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
147957239
Reads aligned (%)
36.8
Duplicates removed (%)
67.6
Number of peaks
4925 (qval < 1E-05)

hg19

Number of total reads
147957239
Reads aligned (%)
36.7
Duplicates removed (%)
68.2
Number of peaks
4902 (qval < 1E-05)

Base call quality data from DBCLS SRA