Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
SU-DHL-4
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

source_name
SUDHL4 cell line, CREBBP knock-out
cell line
SUDHL4
cell type
DLBCL cells
genotype
CREBBP knock-out
antibody
anti-H3K27Ac (Diagenode, C15410196, Lot. A1723-0041D)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
103978424
Reads aligned (%)
97.2
Duplicates removed (%)
22.4
Number of peaks
36157 (qval < 1E-05)

hg19

Number of total reads
103978424
Reads aligned (%)
96.6
Duplicates removed (%)
23.1
Number of peaks
34878 (qval < 1E-05)

Base call quality data from DBCLS SRA