SRX5982357
GSM3855740: A549 AG15694 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Human lung (carcinoma) cell line
cell line
A549
antibody
H3K27me3
genotype/variation
SMARCA4-/-

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
https://www.nature.com/articles/nprot.2018.015 Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8029948
Reads aligned (%)
98.0
Duplicates removed (%)
1.6
Number of peaks
21 (qval < 1E-05)

hg19

Number of total reads
8029948
Reads aligned (%)
97.9
Duplicates removed (%)
1.7
Number of peaks
24 (qval < 1E-05)

Base call quality data from DBCLS SRA