SRX5982231
GSM3855764: A549 AG14316 DNase; Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Human lung (carcinoma) cell line
cell line
A549
genotype/variation
SMARCA4+/+

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
PEG precipitation and size fractionation of DNA Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
98749330
Reads aligned (%)
99.3
Duplicates removed (%)
39.9
Number of peaks
75990 (qval < 1E-05)

hg19

Number of total reads
98749330
Reads aligned (%)
98.9
Duplicates removed (%)
40.3
Number of peaks
77577 (qval < 1E-05)

Base call quality data from DBCLS SRA