SRX5973575
GSM3852934: FoB del 3 ATACseq; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Follicular B cells
NA
NA

Attributes by original data submitter

Sample

source_name
follicular B cells
cell type
follicular B cells
Sex
female
sorting markers
Thy1.1- F4/80- CD11b- B220+ CD93- GL7- CD23+ CD21mid CD1d-
strain
C57BL/6J
organ
spleen
stimulation
no stimulation
lsd1 status
knockout

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
66794309
Reads aligned (%)
74.4
Duplicates removed (%)
66.9
Number of peaks
27902 (qval < 1E-05)

mm9

Number of total reads
66794309
Reads aligned (%)
74.3
Duplicates removed (%)
67.0
Number of peaks
27931 (qval < 1E-05)

Base call quality data from DBCLS SRA