Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pax6

Cell type

Cell type Class
Pancreas
Cell type
Alpha TC1
NA
NA

Attributes by original data submitter

Sample

source_name
alphaTC1 cells
antibody
Pax6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The ChIP-IT High Sensitivity kit (Active Motif) was used according to the kit instructions. ChIP-seq libraries were prepared according to the instructions of the KAPA Hyper Prep kit for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
8370371
Reads aligned (%)
84.6
Duplicates removed (%)
8.1
Number of peaks
14517 (qval < 1E-05)

mm9

Number of total reads
8370371
Reads aligned (%)
84.5
Duplicates removed (%)
8.1
Number of peaks
14524 (qval < 1E-05)

Base call quality data from DBCLS SRA