SRX5951670
GSM3840093: RS input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Round spermatids
NA
NA

Attributes by original data submitter

Sample

source_name
Round Spermatids
tissue
Round Spermatids
strain
C57BL/6J
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and processed as other samples, but without antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
77695715
Reads aligned (%)
49.2
Duplicates removed (%)
20.6
Number of peaks
2988 (qval < 1E-05)

mm9

Number of total reads
77695715
Reads aligned (%)
89.8
Duplicates removed (%)
20.0
Number of peaks
13440 (qval < 1E-05)

Base call quality data from DBCLS SRA