SRX5938772
Input Control ChIP-Seq of PrePregnancy BalbC Luminal Mammary Epithelial Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

strain
129/C57Bl6
dev_stage
PrePregnancy
sex
female
tissue
Mammary Gland
cell_type
Luminal
replicate
Prelum_Inp_2

Sequenced DNA Library

library_name
BalbC_PrePregnancy_2_Input_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
75569754
Reads aligned (%)
79.0
Duplicates removed (%)
12.2
Number of peaks
606 (qval < 1E-05)

mm9

Number of total reads
75569754
Reads aligned (%)
78.8
Duplicates removed (%)
12.1
Number of peaks
658 (qval < 1E-05)

Base call quality data from DBCLS SRA