SRX5938771
H3K27ac ChIP-Seq of PrePregnancy BalbC Luminal Mammary Epithelial Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

strain
129/C57Bl6
dev_stage
PrePregnancy
sex
female
tissue
Mammary Gland
cell_type
Luminal
replicate
Prelum_k27ac_1

Sequenced DNA Library

library_name
BalbC_PrePregnancy_1_H3K27ac_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28976269
Reads aligned (%)
91.2
Duplicates removed (%)
8.8
Number of peaks
10494 (qval < 1E-05)

mm9

Number of total reads
28976269
Reads aligned (%)
91.0
Duplicates removed (%)
8.8
Number of peaks
4709 (qval < 1E-05)

Base call quality data from DBCLS SRA