SRX5938761
H3K27ac ChIP-Seq of PrePregnancy CAGMYC Basal Mammary Epithelial Cells on Dox Day 5

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

strain
129/C57Bl6
dev_stage
PrePregnancy
sex
female
tissue
Mammary Gland
cell_type
Basal
replicate
Prebas_CagDD5_k27ac

Sequenced DNA Library

library_name
CAGMYC_DD5_PrePregnancy_Basal_H3K27ac_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37662323
Reads aligned (%)
90.0
Duplicates removed (%)
19.0
Number of peaks
12295 (qval < 1E-05)

mm9

Number of total reads
37662323
Reads aligned (%)
89.8
Duplicates removed (%)
18.9
Number of peaks
12320 (qval < 1E-05)

Base call quality data from DBCLS SRA