Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary activated splenic B lymphocytes
cell type
Rosa26ERT2-cre/+ primary B cells
treatment
4-hydroxy tamoxifen (4-HT)

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was performed as previously described (Buenrostro et al., 2013) with minor modifocations in the tagmentation step where we used a homemade Tn5 enzyme and assembeld the Tn5-adapter tagmentation mix ourselves. However, the adapter sequences and primers used for library amplification are the same as in the Buenrostro et al. protocol. transposed DNA was amplified with RT-qPCR monitoring to avoid oveamplification and the libraries were purified with AMPure XP beads.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
80806589
Reads aligned (%)
82.1
Duplicates removed (%)
62.5
Number of peaks
43582 (qval < 1E-05)

mm9

Number of total reads
80806589
Reads aligned (%)
82.1
Duplicates removed (%)
62.6
Number of peaks
43551 (qval < 1E-05)

Base call quality data from DBCLS SRA