Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
Nxf2-KD OSC
cell type
Ovarian Somatic Cells (OSC)
variation
RNAi Nxf2
chip/clip antibody
anti-H3K9me3 antibody (61013, Active motif)
molecule subtype
genomic DNA

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm6

Number of total reads
3291613
Reads aligned (%)
85.5
Duplicates removed (%)
15.2
Number of peaks
2280 (qval < 1E-05)

dm3

Number of total reads
3291613
Reads aligned (%)
86.9
Duplicates removed (%)
7.8
Number of peaks
3947 (qval < 1E-05)

Base call quality data from DBCLS SRA