SRX5930145
GSM3831287: RH4 Ent6 MYOD; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYOD1

Cell type

Cell type Class
Muscle
Cell type
RH-4
NA
NA

Attributes by original data submitter

Sample

source_name
RH4
antibody
MYOD SantaCruz (M-318) sc-760
enrichment target
MYOD
target function
Myogenic Transcription Factor
treatment
Entinostat

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47192284
Reads aligned (%)
96.6
Duplicates removed (%)
20.6
Number of peaks
31368 (qval < 1E-05)

hg19

Number of total reads
47192284
Reads aligned (%)
95.9
Duplicates removed (%)
22.3
Number of peaks
31514 (qval < 1E-05)

Base call quality data from DBCLS SRA