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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: EpiSC
ATCC
MeSH
RIKEN BRC
SRX590285
GSM1410353: G-IgG ChIP; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA
Attributes by original data submitter
Sample
source_name
G-IgG ChIP
cell type
EpiSCs (G cells); epiblast stem cells
cell line of origin
dual miRNA reporter V6.5 ESCs
treatment
bFgf Activin
chip antibody
IgG (normal rabbit)
chip antibody vendor
Invitrogen
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
39091572
Reads aligned (%)
43.9
Duplicates removed (%)
70.2
Number of peaks
302 (qval < 1E-05)
mm9
Number of total reads
39091572
Reads aligned (%)
43.8
Duplicates removed (%)
70.4
Number of peaks
294 (qval < 1E-05)
Base call quality data from
DBCLS SRA