SRX590269
GSM1410337: dR-IgG ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
dR-IgG ChIP
cell type
day 1 ESC differentiation (dR cells)
cell line of origin
dual miRNA reporter V6.5 ESCs
treatment
-Lif -2i day 1
chip antibody
IgG (normal rabbit)
chip antibody vendor
Invitrogen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42481755
Reads aligned (%)
88.5
Duplicates removed (%)
74.7
Number of peaks
446 (qval < 1E-05)

mm9

Number of total reads
42481755
Reads aligned (%)
88.3
Duplicates removed (%)
74.8
Number of peaks
486 (qval < 1E-05)

Base call quality data from DBCLS SRA