SRX5891231
H3K27me3 ChIP-seq of Setdb1-CKO mESC in SL condition (no 4OHT)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
CBA/CaJ C57BL/6J
dev_stage
embryonic stem cell
sex
male
tissue
embryonic stem cell
cell_line
OG2
cell_subtype
Setdb1-CKO
cell_type
embryonic stem cell
growth_protocol
SL
sample_type
Cell Culture
treatment
no
replicate
biological replicate 1

Sequenced DNA Library

library_name
H3K27me3-SL-ChIP-seq-no4HT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14554444
Reads aligned (%)
84.7
Duplicates removed (%)
41.1
Number of peaks
109 (qval < 1E-05)

mm9

Number of total reads
14554444
Reads aligned (%)
84.6
Duplicates removed (%)
41.2
Number of peaks
106 (qval < 1E-05)

Base call quality data from DBCLS SRA