SRX5891226
Setdb1 ChIP-seq of mESC in SL condition

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
CBA/CaJ C57BL/6J
dev_stage
embryonic stem cell
sex
male
tissue
embryonic stem cell
cell_line
OG2
cell_subtype
WT
cell_type
embryonic stem cell
growth_protocol
2iL
sample_type
Cell Culture
treatment
no
replicate
NA

Sequenced DNA Library

library_name
Setdb1-SL-ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24075070
Reads aligned (%)
86.8
Duplicates removed (%)
34.1
Number of peaks
171 (qval < 1E-05)

mm9

Number of total reads
24075070
Reads aligned (%)
86.4
Duplicates removed (%)
34.3
Number of peaks
168 (qval < 1E-05)

Base call quality data from DBCLS SRA