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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX5891225
Setdb1 ChIP-seq of mESC in 2iL condition
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
strain
CBA/CaJ C57BL/6J
dev_stage
embryonic stem cell
sex
male
tissue
embryonic stem cell
cell_line
OG2
cell_subtype
WT
cell_type
embryonic stem cell
growth_protocol
2iL
sample_type
Cell Culture
treatment
no
replicate
NA
Sequenced DNA Library
library_name
Setdb1-2iL-ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq X Ten
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
21795356
Reads aligned (%)
89.1
Duplicates removed (%)
43.1
Number of peaks
144 (qval < 1E-05)
mm9
Number of total reads
21795356
Reads aligned (%)
88.7
Duplicates removed (%)
43.3
Number of peaks
133 (qval < 1E-05)
Base call quality data from
DBCLS SRA