Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic trunk
NA
NA

Attributes by original data submitter

Sample

source_name
dissected embryonic trunk tissue
genotype
wild-type
strain
outbred
tissue
stage E8.5 embryo
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Total genomic DNA for all samples (except input) were extracted following immunoprecipitation using the Pierce Magnetic ChIP Kit (Thermo Scientific, Cat# 26157) following the manufacturer's instructions. Antibodies used were specific for either H3K27ac or H3K27me3 (Active Motif). Genomic DNA for input samples were prepared using the same protocol but without immunoprecipitation. Libraries were prepared according to NEB's instructions accompanying the NEBNext DNA Ultra II kit (catalog # E7645S). Libraries were sequenced on the NextSeq 500 following the manufacturer's protocols.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
36999598
Reads aligned (%)
97.9
Duplicates removed (%)
14.7
Number of peaks
364 (qval < 1E-05)

mm9

Number of total reads
36999598
Reads aligned (%)
97.7
Duplicates removed (%)
14.7
Number of peaks
370 (qval < 1E-05)

Base call quality data from DBCLS SRA