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For sacCer3
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
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For sacCer3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For sacCer3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H2A
wikigenes
PDBj
CellType: JB2083
ATCC
MeSH
RIKEN BRC
SRX5874502
GSM3788421: cdc45 td yH2A rep2; Saccharomyces cerevisiae; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H2A
Cell type
Cell type Class
Yeast strain
Cell type
JB2083
NA
NA
Attributes by original data submitter
Sample
source_name
Saccharomyces cerevisiae
strain
JB2083
genotype
Mat a ade2-1 his3-11 leu2-3 trp1-1 ura3-1 can1-100 UBR1::GAL1-10-Ubiquitin-M-LacI fragment-Myc-UBR1 (HIS3) leu2-3::pCM244 (CMVp-tetRprime-SSN6, LEU2) x3 CDC45::cdc45-td (CUP1p-Ub-DHFRts-HA-CDC45)(TRP1)
chip antibody
yH2A (1.6 ug/ml final concentration, Abcam, ab181447)
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
sacCer3
Number of total reads
2050761
Reads aligned (%)
57.9
Duplicates removed (%)
3.9
Number of peaks
159 (qval < 1E-05)
Base call quality data from
DBCLS SRA