Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA

Attributes by original data submitter

Sample

source_name
skeletal muscle - quadricep
strain
C57BL/6
genotype
wild type
antibody
H3K27ac (Active Motif 31933)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Skeletal muscle was dissected and finely minced. ChIP-seq samples were subjected to cross linking in 1% formaldehyde for 30 minutes and quenched with glycine. Tissue was dounced to release nuclei. Nuclei were sonicated to shear the chromatin and subjected to immunoprecipitation. Precipitates were washed and DNA was purified by column (Qiagen Min-Elute). ChIP-seq libraries were prepared with the KAPA Hyper Prep Kit (Kapa Biosciences). Kapa Hyper Prep

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
27560409
Reads aligned (%)
97.6
Duplicates removed (%)
18.2
Number of peaks
31081 (qval < 1E-05)

mm9

Number of total reads
27560409
Reads aligned (%)
97.5
Duplicates removed (%)
18.2
Number of peaks
31065 (qval < 1E-05)

Base call quality data from DBCLS SRA