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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9me3
wikigenes
PDBj
CellType: C3H/10T1/2
ATCC
MeSH
RIKEN BRC
SRX5862368
GSM3780550: Mouse 10T1/2, Wildtype 3 [ChIP-seq]; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9me3
Cell type
Cell type Class
Embryonic fibroblast
Cell type
C3H/10T1/2
NA
NA
Attributes by original data submitter
Sample
source_name
10T1/2_WT_3
cell line
10T1/2
genotype/variation
WT
treatment
None
chip antibody
H3K9me3 (Abcam, ab8898)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were constructed with the NEBNext ChIP-seq library prep kit following the manufacturer's recommended protocol (New England Biolabs, Ipswich, MA, USA).
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
23664616
Reads aligned (%)
96.3
Duplicates removed (%)
26.7
Number of peaks
357 (qval < 1E-05)
mm9
Number of total reads
23664616
Reads aligned (%)
95.8
Duplicates removed (%)
28.8
Number of peaks
358 (qval < 1E-05)
Base call quality data from
DBCLS SRA