SRX5836654
ChIP-Seq:genotoxic stress

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

isolate
ChIP seq
age
fetal
biomaterial_provider
Lab of prof. Jun Li
sex
female
tissue
cell line

Sequenced DNA Library

library_name
genotoxic stress ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
111426805
Reads aligned (%)
92.6
Duplicates removed (%)
20.8
Number of peaks
4723 (qval < 1E-05)

hg19

Number of total reads
111426805
Reads aligned (%)
91.9
Duplicates removed (%)
21.7
Number of peaks
3192 (qval < 1E-05)

Base call quality data from DBCLS SRA