SRX5828012
GSM3764943: ATAC-seq E11.5 lib1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Inner ear
NA
NA

Attributes by original data submitter

Sample

source_name
Inner ear E11.5 wild type
strain
CD1
tissue
inner ear
developmental stage
E11.5

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Libraries were prepared using the Nextera DNA Library Preparation kit (Illumina#15028211)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41581780
Reads aligned (%)
89.2
Duplicates removed (%)
8.6
Number of peaks
2294 (qval < 1E-05)

mm9

Number of total reads
41581780
Reads aligned (%)
89.0
Duplicates removed (%)
8.7
Number of peaks
2283 (qval < 1E-05)

Base call quality data from DBCLS SRA