Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic beta cells
NA
NA

Attributes by original data submitter

Sample

source_name
FAC-sorted pancreatic beta cells
strain background
mixed 129J-C57BL/6
genotype/variation
RIP-Cre/FoxO1 floxed (IKO)
age
12M
parity
nulliparous
cell type
FAC-sorted pancreatic beta cells
chip antibody
anti-H3K27me3, Millipore 07-449 (RRID: AB_310624)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
We purified the pancreatic islets (Kuo et al, JBC 2016) and FAC-sorted the beta cells. ChIP was performed using appropriate antibody against modified histone. ChIP DNA libraries were prepared from ChIP DNA with the following steps: end-repair, dA-addition, adaptor ligation and PCR amplification. The resulting ChIPseq DNA libraries were quantified with Bioanalyzer (Agilent), and sequenced on Illumina NextSeq 500 with 75-nt reads and single-end.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
41666742
Reads aligned (%)
86.7
Duplicates removed (%)
12.3
Number of peaks
1692 (qval < 1E-05)

mm9

Number of total reads
41666742
Reads aligned (%)
86.5
Duplicates removed (%)
12.3
Number of peaks
1671 (qval < 1E-05)

Base call quality data from DBCLS SRA