Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Cx3cr1KO_Input_F
strain
C57BL/6J
genotype
Cx3cr1-deficient
chip antibody
none
gender
female

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq sequencing libraries were prepared from recovered DNA by blunting, A-tailing, and adapter ligation using barcoded adapters (NextFlex, Bioo Scientific) as previously described (Heinz et al., 2010; Gosselin et al., 2014). Libraries were PCR-amplified for 12-15 cycles and size selected for fragments (225-400 bp) by gel extraction (10% TBE gels, Life Technologies EC62752BOX). Libraries were single-end sequenced for 51 cycles with an average sequence depth >20 million on an Illumina HiSeq 4000 or NextSeq 500 platform (Illumina, San Diego, CA) according to manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
120991834
Reads aligned (%)
98.9
Duplicates removed (%)
44.1
Number of peaks
520 (qval < 1E-05)

mm9

Number of total reads
120991834
Reads aligned (%)
98.7
Duplicates removed (%)
44.1
Number of peaks
558 (qval < 1E-05)

Base call quality data from DBCLS SRA