Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Neural
Cell type
Lateral temporal lobe
NA
NA

Attributes by original data submitter

Sample

source_name
Frozen postmortem brain tissue
biomaterial_provider
CNDR brain bank (Penn)
disease state
AD
tissue
Lateral temporal lobe
chip antibody
H3K9ac - Active Motif #39137

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
12992255
Reads aligned (%)
98.2
Duplicates removed (%)
2.9
Number of peaks
15048 (qval < 1E-05)

hg19

Number of total reads
12992255
Reads aligned (%)
98.0
Duplicates removed (%)
3.1
Number of peaks
15034 (qval < 1E-05)

Base call quality data from DBCLS SRA