Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Gonad
Cell type
Granulosa Cells
MeSH Description
Supporting cells for the developing female gamete in the OVARY. They are derived from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the OOCYTE in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the OVUM in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors (RECEPTORS, LH).

Attributes by original data submitter

Sample

source_name
H3_TESm
strain background
C57BL/6 x CD1
genotype/variation
TESM-CFP
embryonic stage
E13.5
Sex
female
cell type
FACS-sorted granulosa cells
chip antibody
H3 Active Motif 39763
chip protocol
Van Galen et al, 2016

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
29792070
Reads aligned (%)
93.3
Duplicates removed (%)
13.7
Number of peaks
250 (qval < 1E-05)

mm9

Number of total reads
29792070
Reads aligned (%)
93.2
Duplicates removed (%)
13.7
Number of peaks
285 (qval < 1E-05)

Base call quality data from DBCLS SRA