Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Gonad
Cell type
Round spermatids
NA
NA

Attributes by original data submitter

Sample

source_name
H3K27ac_RS_Scml2KO
strain background
C57BL/6
genotype/variation
Scml2-KO
age
adult
tissue
testis
cell type
Round spermatides
chip antibody
H3K27ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Germ cells were isolated from mouse testis by STA-PUT method or MACS. Cells were fixed in 1% formaldehyde for 10 min at RT. Nuclei were isolated by lysis buffer. Chromatin was sonicated by Covaris sonicater and used for ChIP experiments. see ChIPmentation (PMID: 26280331)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
20030020
Reads aligned (%)
84.0
Duplicates removed (%)
16.4
Number of peaks
12846 (qval < 1E-05)

mm9

Number of total reads
20030020
Reads aligned (%)
83.9
Duplicates removed (%)
16.5
Number of peaks
12846 (qval < 1E-05)

Base call quality data from DBCLS SRA