SRX5781491
GSM3744923: Ctrl Treg; Mus musculus; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CD25hi Treg cells
strain
NOD
tissue
Spleen
agent
PBS
age
10 weeks
cell type
CD4+CD25hi Treg cells

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Libraries were prepared with the Hyper Library construction kit from Kapa Biosystems (Roche) and treated with the Lightning EZ kit from Zymo Research

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
614728197
Reads aligned (%)
92.3
Coverage rate (×)
10.6
Number of hyper MRs
270259 (qval < 1E-05)

mm9

Number of total reads
614728197
Reads aligned (%)
93.0
Coverage rate (×)
10.6
Number of hyper MRs
269959 (qval < 1E-05)

Base call quality data from DBCLS SRA