SRX5759389
ChIP-seq of homo sapiens: prostate cancer cell line

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
prostate cancer patient
age
62
biomaterial_provider
ATCC
sex
male
tissue
prostate; derived from metastatic site: bone
cell_line
pc3
sample_type
H2AUb_ChIP_rep2

Sequenced DNA Library

library_name
2_ubH2A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32583954
Reads aligned (%)
98.4
Duplicates removed (%)
8.5
Number of peaks
672 (qval < 1E-05)

hg19

Number of total reads
32583954
Reads aligned (%)
97.7
Duplicates removed (%)
9.5
Number of peaks
735 (qval < 1E-05)

Base call quality data from DBCLS SRA