SRX5735794
GSM3735975: Mi2b proB ATAC rep3; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Adult bone marrow
strain
C57BL/6 x 129/Sv
tissue
bone marrow
cell type
Pro-B
genotype
Chd4-/-

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Erythroid, myeloid, T cells, NK cells and mature B lineage (Lin) cells were depleted from BM cell suspensions, and Lin–cKitloCD19+CD43+were sorted as pro-B cells by FACS. Nextera DNA sample prep kit (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
92423042
Reads aligned (%)
73.7
Duplicates removed (%)
46.8
Number of peaks
81815 (qval < 1E-05)

mm9

Number of total reads
92423042
Reads aligned (%)
73.6
Duplicates removed (%)
46.8
Number of peaks
81850 (qval < 1E-05)

Base call quality data from DBCLS SRA