SRX5735791
GSM3735972: WT proB ATAC rep3; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Adult bone marrow
strain
C57BL/6 x 129/Sv
tissue
bone marrow
cell type
Pro-B
genotype
WT

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Erythroid, myeloid, T cells, NK cells and mature B lineage (Lin) cells were depleted from BM cell suspensions, and Lin–cKitloCD19+CD43+were sorted as pro-B cells by FACS. Nextera DNA sample prep kit (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
122424805
Reads aligned (%)
76.8
Duplicates removed (%)
49.0
Number of peaks
63671 (qval < 1E-05)

mm9

Number of total reads
122424805
Reads aligned (%)
76.6
Duplicates removed (%)
49.0
Number of peaks
63625 (qval < 1E-05)

Base call quality data from DBCLS SRA