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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Pro-B cells
ATCC
MeSH
RIKEN BRC
SRX5735790
GSM3735971: WT proB ATAC rep2; Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Blood
Cell type
Pro-B cells
NA
NA
Attributes by original data submitter
Sample
source_name
Adult bone marrow
strain
C57BL/6 x 129/Sv
tissue
bone marrow
cell type
Pro-B
genotype
WT
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Erythroid, myeloid, T cells, NK cells and mature B lineage (Lin) cells were depleted from BM cell suspensions, and Lin–cKitloCD19+CD43+were sorted as pro-B cells by FACS. Nextera DNA sample prep kit (Illumina)
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
81624847
Reads aligned (%)
74.4
Duplicates removed (%)
42.9
Number of peaks
52363 (qval < 1E-05)
mm9
Number of total reads
81624847
Reads aligned (%)
74.2
Duplicates removed (%)
42.9
Number of peaks
52342 (qval < 1E-05)
Base call quality data from
DBCLS SRA