SRX5735032
ChIP-seq of homo sapiens: prostate cancer cell line

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
prostate cancer patient
age
62
biomaterial_provider
ATCC
sex
male
tissue
prostate; derived from metastatic site: bone
cell_line
pc3
sample_type
Pcgf1_ChIP

Sequenced DNA Library

library_name
4_Pcgf1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38146163
Reads aligned (%)
93.4
Duplicates removed (%)
9.8
Number of peaks
751 (qval < 1E-05)

hg19

Number of total reads
38146163
Reads aligned (%)
92.9
Duplicates removed (%)
10.7
Number of peaks
826 (qval < 1E-05)

Base call quality data from DBCLS SRA