SRX5735031
ChIP-seq of homo sapiens: prostate cancer cell line

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
prostate cancer patient
age
62
biomaterial_provider
ATCC
sex
male
tissue
prostate; derived from metastatic site: bone
cell_line
pc3
sample_type
Phc2_ChIP

Sequenced DNA Library

library_name
5_Phc2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66548298
Reads aligned (%)
92.0
Duplicates removed (%)
49.8
Number of peaks
4445 (qval < 1E-05)

hg19

Number of total reads
66548298
Reads aligned (%)
91.5
Duplicates removed (%)
51.2
Number of peaks
4789 (qval < 1E-05)

Base call quality data from DBCLS SRA