Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Prostate
Cell type
22Rv1
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
22RV1 immortalized prostate cancer cell line
chip antibody
H3K27Ac (Active Motif, Cat 39133)
cell line
22RV1 immortalized prostate cancer cell line
agent
DMSO + 5 nM DHT, 6 hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated, fixed cell pellets and protein-DNA complexes were isolated with antibody. Illumina sequencing libraries were prepared from the ChIP and Input DNAs by the standard consecutive enzymatic steps of end-polishing, dA-addition, and adaptor ligation.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
33747104
Reads aligned (%)
96.7
Duplicates removed (%)
9.9
Number of peaks
27417 (qval < 1E-05)

hg19

Number of total reads
33747104
Reads aligned (%)
96.3
Duplicates removed (%)
10.5
Number of peaks
27220 (qval < 1E-05)

Base call quality data from DBCLS SRA