SRX5723680
GSM3733314: WT Wnt3a β-catenin ChIP-seq Rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctnnb1

Cell type

Cell type Class
Kidney
Cell type
mIMCD-3
NA
NA

Attributes by original data submitter

Sample

source_name
mIMCD3 cells
cell line
mIMCD3
cell type
Renal epithelial cell line
genotype/variation
WT
passage
5-8
treatment
Wnt3a
chip antibody
alpha-beta-catenin (Cell Signaling #8480S, Lot5)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were prepared by SimpleChIP Plus Enzymatic Chromatin IP Kit (Cell Signaling). ChIP-seq libraries were made by ThruPLEX DNA-seq Kit (Rubicon Genomics).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46993395
Reads aligned (%)
88.5
Duplicates removed (%)
22.0
Number of peaks
365 (qval < 1E-05)

mm9

Number of total reads
46993395
Reads aligned (%)
88.3
Duplicates removed (%)
22.0
Number of peaks
421 (qval < 1E-05)

Base call quality data from DBCLS SRA