Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctnnb1

Cell type

Cell type Class
Kidney
Cell type
mIMCD-3
NA
NA

Attributes by original data submitter

Sample

source_name
mIMCD3 cells
cell line
mIMCD3
cell type
Renal epithelial cell line
genotype/variation
HNF-1beta -/-
passage
5-8
treatment
Mock
chip antibody
alpha-beta-catenin (Cell Signaling #8480S, Lot5)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were prepared by SimpleChIP Plus Enzymatic Chromatin IP Kit (Cell Signaling). ChIP-seq libraries were made by ThruPLEX DNA-seq Kit (Rubicon Genomics).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
49628829
Reads aligned (%)
95.4
Duplicates removed (%)
20.5
Number of peaks
358 (qval < 1E-05)

mm9

Number of total reads
49628829
Reads aligned (%)
95.2
Duplicates removed (%)
20.5
Number of peaks
396 (qval < 1E-05)

Base call quality data from DBCLS SRA