SRX5719599
GSM3732749: ChIPseq CUTLL1 CTCF GSI; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
CUTLL1
cell type
CUTLL1
chip antibody
CTCF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Phenol/chloroform DNA extraction Libraries were prepped with a KAPA high throughput library prep kit using a Sciclone® G3 NGS and NGSx Workstation

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49477728
Reads aligned (%)
98.3
Duplicates removed (%)
14.2
Number of peaks
38498 (qval < 1E-05)

hg19

Number of total reads
49477728
Reads aligned (%)
97.5
Duplicates removed (%)
15.2
Number of peaks
38126 (qval < 1E-05)

Base call quality data from DBCLS SRA