Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

strain
F1 C57/Bl6J-129Sv/Pas
isolate
86
breed
na
cultivar
no
ecotype
na
age
3 month
dev_stage
adult
sex
male
tissue
liver
sample_type
ChIP fraction

Sequenced DNA Library

library_name
H0JA1ADXX,1,IP86,ChIP-Seq,CAGATC,,N,,MB+NC,Lkappeler2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
46679596
Reads aligned (%)
100.0
Duplicates removed (%)
12.1
Number of peaks
1256 (qval < 1E-05)

mm9

Number of total reads
46679596
Reads aligned (%)
100.0
Duplicates removed (%)
12.1
Number of peaks
1256 (qval < 1E-05)

Base call quality data from DBCLS SRA