SRX5706744
EC 042 HENDC ChIP-seq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Cardiovascular
Cell type
Endocardial cells
NA
NA

Attributes by original data submitter

Sample

isolate
JTK027
age
23
biomaterial_provider
Lifeline Cell Technology
sex
male
tissue
Endocardium
cell_type
Endocardial cells
race
Caucasian
sample_type
cell culture

Sequenced DNA Library

library_name
EC42_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43804111
Reads aligned (%)
99.1
Duplicates removed (%)
6.1
Number of peaks
1394 (qval < 1E-05)

hg19

Number of total reads
43804111
Reads aligned (%)
98.3
Duplicates removed (%)
7.7
Number of peaks
1275 (qval < 1E-05)

Base call quality data from DBCLS SRA