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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Carotid artery endothelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5706727
EC 052 HCCaEC ChIP-seq Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Cardiovascular
Cell type
Carotid artery endothelial cells
NA
NA
Attributes by original data submitter
Sample
isolate
JTK034
age
23
biomaterial_provider
Youichiro Wada
sex
male
tissue
Common carotid artery
cell_type
Carotid artery endothelial cells
race
Asian
sample_type
cell culture
Sequenced DNA Library
library_name
EC52_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33178999
Reads aligned (%)
99.0
Duplicates removed (%)
4.8
Number of peaks
1184 (qval < 1E-05)
hg19
Number of total reads
33178999
Reads aligned (%)
98.3
Duplicates removed (%)
6.4
Number of peaks
1149 (qval < 1E-05)
Base call quality data from
DBCLS SRA